cath-assign-domains

Description

============
cath-assign-domains v0.14.1-0-gbb6e6a3 [2017-05-31]
============

Use an SVM model on SSAP+PRC data to form a plan for assigning the domains to CATH superfamilies/folds

Build
-----
   May 31 2017 08:33:21
   Clang version 3.6.2 (branches/release_36)
   GNU libstdc++ version 20160726
   Boost 1_57

Usage

Usage: cath-assign-domains [options]

Use an SVM model on SSAP+PRC data to form a plan for assigning the domains to CATH superfamilies/folds

Miscellaneous:
  -h [ --help ]                                                     Output help message
  -v [ --version ]                                                  Output version information

CATH Assign Domains Specification:
  --svmlight-rbf-file arg                                           File containing SVM-light RBF model for CATH assignment
  --filelist-file arg                                               File of data files (one line per query domain containing: ssap_results_file prc_results_file)
  --sf-of-domain-file arg                                           File containing up-to-date assignments (one line per domain containing: domain_id superfamily_id)
  --forbidden-node arg (=2.105, 2.110, 2.115, 2.120, 2.130, 2.140)  List of nodes to which automatic assignment is forbidden; specify option multiple times for multiple nodes
                                                                    RECOMMENDED: do not specify this option so that the default list of propeller architectures is used.

Please tell us your cath-tools bugs/suggestions : https://github.com/UCLOrengoGroup/cath-tools/issues/new