Usage
Usage: cath-assign-domains [options]
Use an SVM model on SSAP+PRC data to form a plan for assigning the domains to CATH superfamilies/folds
Miscellaneous:
-h [ --help ] Output help message
-v [ --version ] Output version information
CATH Assign Domains Specification:
--svmlight-rbf-file arg File containing SVM-light RBF model for CATH assignment
--filelist-file arg File of data files (one line per query domain containing: ssap_results_file prc_results_file)
--sf-of-domain-file arg File containing up-to-date assignments (one line per domain containing: domain_id superfamily_id)
--forbidden-node arg (=2.105, 2.110, 2.115, 2.120, 2.130, 2.140) List of nodes to which automatic assignment is forbidden; specify option multiple times for multiple nodes
RECOMMENDED: do not specify this option so that the default list of propeller architectures is used.
Please tell us your cath-tools bugs/suggestions : https://github.com/UCLOrengoGroup/cath-tools/issues/new