cath-assign-domains.ubuntu-20.04

Description

============
cath-assign-domains v0.16.10-0-g99edb28 [2021-04-20]
============

Use an SVM model on SSAP+PRC data to form a plan for assigning the domains to CATH superfamilies/folds

Build
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   Apr 20 2021 13:24:46
   GNU C++ version 10.2.0
   GNU libstdc++ version 20200808
   Boost 1_71

Usage

Usage: cath-assign-domains [options]

Use an SVM model on SSAP+PRC data to form a plan for assigning the domains to CATH superfamilies/folds

Miscellaneous:
  -h [ --help ]                                                     Output help message
  -v [ --version ]                                                  Output version information

CATH Assign Domains Specification:
  --svmlight-rbf-file arg                                           File containing SVM-light RBF model for CATH assignment
  --filelist-file arg                                               File of data files (one line per query domain containing: ssap_results_file prc_results_file)
  --sf-of-domain-file arg                                           File containing up-to-date assignments (one line per domain containing: domain_id superfamily_id)
  --forbidden-node arg (=2.105, 2.110, 2.115, 2.120, 2.130, 2.140)  List of nodes to which automatic assignment is forbidden; specify option multiple times for multiple nodes
                                                                    RECOMMENDED: do not specify this option so that the default list of propeller architectures is used.

Please tell us your cath-tools bugs/suggestions : https://github.com/UCLOrengoGroup/cath-tools/issues/new